“How Plants Harness RNA to Master Their Microbiomes”


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While plant leaves might appear inconspicuous, a fascinating revelation lies beneath their shiny exteriors: they are adorned with a variety of RNA (ribonucleic acid) molecules.

This discovery has the capacity to alter our comprehension of botany and the interactions between flora and their environment.

The research was spearheaded by Lucía Borniego and Meenu Singla-Rastogi, postdoctoral researchers at Indiana University Bloomington, in collaboration with Roger Innes, a biology professor.

This study provides a novel viewpoint on the intricate connections between plants and microbes.

“What thrills us the most about this finding is that it suggests plants could regulate their microbiomes, partly through managing gene expression in microbes via cross-kingdom RNA interference, commonly referred to as RNAi,” stated Innes.

But what does this entail, and why is it important?

Groundbreaking finding: Plant RNAs on leaf surfaces

RNA, a delicate molecule, typically breaks down rapidly outside a cell unless safeguarded. Nonetheless, this research uncovers that plants discharge viable RNA onto their leaf surfaces, where it remains unexpectedly stable.

This revelation implies that RNA from plants could directly affect microbial populations on leaf surfaces, engaging in cross-kingdom RNAi – a mechanism through which RNA from one organism influences gene expression in another.

Cross-kingdom RNAi is not a recent concept in biology. Researchers have recognized that organisms can exchange RNA to modulate genes. What is remarkable in this case is the notion that plants may utilize this process to engage with microbes that are inhabiting their surfaces.

“It has only been shown recently that RNAs produced by one organism can be absorbed by another organism and then form base pairs with RNAs in the receptor organism,” Innes elaborated. RNA interference seems to take place in nearly all living organisms.

Function of RNA and polysaccharides in plants

The research team identified substantial RNAs on the leaf surfaces of Arabidopsis thaliana, a model organism extensively used in research.

These RNAs exhibited stability, likely due to their formation of condensates with polysaccharides, such as pectin.

As an element of the plant cell wall, pectin seems to provide a protective function, enabling RNA molecules to survive outside plant cells.

The ramifications are significant. Stable RNA on leaf surfaces indicates that microbes dwelling in these regions are exposed to plant-derived RNA. This exposure could affect microbial gene expression, potentially determining which microbial species can flourish on leaf surfaces.

This capability to “curate” microbial populations might influence plant vitality, resilience to disease, and overall development.

Why is this essential? The broader context

The ramifications of this study reach well beyond plants.

“The manipulation of microbial communities by environmental RNA is likely occurring in our own intestines as well, with RNA being released by our intestinal epithelial cells,” remarked Innes.

This implies that a deeper understanding of plant-microbe interactions could illuminate similar principles in humans and other animals.

The association doesn’t stop there. Consider the salad you consumed at lunch. The RNA on the surface of those leafy greens could engage with your gut microbiome, influencing its structure and, potentially, your well-being.

While this hypothesis necessitates further investigation, it unveils intriguing prospects regarding how our diets might directly shape our microbial ecosystems.

Potential uses in agriculture and medicine

This finding transcends mere scientific interest; it could have practical implications. If plants can leverage RNA to affect microbial communities, farmers might one day harness this capability to boost crop vitality.

For instance, plants could be genetically modified to secrete specific RNAs that deter harmful microbes or encourage beneficial ones.

In healthcare, comprehending how RNA shapes microbial ecosystems could pave the way for novel treatments. Envision using RNA-based therapies to modulate the gut microbiome in patients suffering from digestive disorders or metabolic conditions.

Although these applications are theoretical, the foundation established by this study offers a framework for potential future inquiry.

Call for additional research on plant RNA

While this study presents valuable insights, it also prompts new inquiries.

How do specific RNAs affect microbial gene expression? Are there certain microbes that are more receptive to RNA interference? And which environmental elements impact RNA stability on plant surfaces?

Moreover, the possible interaction between plant RNAs and the human microbiome merits thorough exploration. Could ingesting RNA-coated plants yield measurable impacts on human health?

Future investigations will need to tackle these questions to unlock the full significance of these findings.

A glimpse into nature’s intricacy

This revelation serves as a reminder of the intricate complexity of nature. From the stability of RNA on plant surfaces to its potential to shape microbial communities, the study provides insight into the complexity of concealed genetic mechanisms.

The research emphasizes the interconnectedness of life on Earth – illustrating how plants, microbes, and even humans are linked by molecular interactions that transcend species boundaries.

“It is quite possible that RNA on leaf surfaces, such as in salad, could impact our own gut microbiomes,” stated Innes.

This notion challenges us to reconsider our relationship with plants, not merely as sources of sustenance or oxygen, but as involved participants in a dynamic, interconnected biosphere.

The research was a collaborative endeavor. In addition to the Indiana University team, contributors included Patricia Baldrich and Blake C. Meyers from the University of California Davis, and Madison McGregor from the Donald Danforth Plant Science Center.

The multidisciplinary nature of this research enhances its significance. By integrating biology, chemistry, and molecular genetics, the team revealed a dimension of plant-microbe interaction that had remained concealed until now.

The study is documented in the journal Proceedings of the National Academy of Sciences.

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